{ "_id": "6a4df3b7e691af43f13de994", "Package": "vegdata", "Title": "Access Vegetation Databases and Treat Taxonomy", "Version": "1.9.18", "Authors@R": "person(\"Florian\", \"Jansen\", role = c(\"aut\", \"cre\"), email = \"florian.jansen@uni-rostock.de\")", "Description": "Handling of vegetation data from different sources but\nespecially Turboveg 2.0. Taxonomic harmonization (given\nappropriate taxonomic lists, e.g. GermanSL and EuroSL (Euro+Med\nextended) see ).", "License": "GPL (>= 2)", "URL": "https://git.loe.auf.uni-rostock.de/jansen/vegdata.git", "VignetteBuilder": "knitr", "Encoding": "UTF-8", "LazyData": "Yes", "Config/roxygen2/version": "8.0.0", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-08 06:48:55 UTC", "User": "root" }, "Author": "Florian Jansen [aut, cre]", "Maintainer": "Florian Jansen ", "Config/pak/sysreqs": "libicu-dev libxml2-dev libssl-dev", "Repository": "https://florian-jansen.r-universe.dev", "Date/Publication": "2026-07-07 20:00:02 UTC", "RemoteUrl": "https://github.com/cran/vegdata", "RemoteRef": "HEAD", "RemoteSha": "54f59fedb5b0593ddd865dc0bfee43fc3211ec96", "_user": "florian-jansen", "_type": "src", "_file": "vegdata_1.9.18.tar.gz", "_fileid": "https://r2.ropensci.org/c6ea3ed58f510b88ec34ad4aa3f0d36f02d693310b22823ffbda36e2cc0b7853", "_filesize": 697067, "_sha256": "c6ea3ed58f510b88ec34ad4aa3f0d36f02d693310b22823ffbda36e2cc0b7853", "_expires": "2026-10-16T06:52:37.000Z", "_created": "2026-07-08T06:48:55.000Z", "_published": "2026-07-08T06:52:39.530Z", "_jobs": [ { "job": 85805426894, "time": 154, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "8160394955" }, { "job": 85805426906, "time": 174, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "8160395650" }, { "job": 85805426887, "time": 167, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "8160389174" }, { "job": 85805426890, "time": 170, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "8160392158" }, { "job": 85804807735, "time": 239, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8160343737" }, { "job": 85805426861, "time": 123, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8160385116" }, { "job": 85805426914, "time": 92, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "8160375673" }, { "job": 85805426938, "time": 100, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "8160379015" }, { "job": 85805426900, "time": 101, "config": "windows-release", "r": "4.6.1", "check": "OK", "artifact": "8160378472" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/florian-jansen/actions/runs/28923191373", "_status": "success", "_upstream": "https://github.com/cran/vegdata", "_commit": { "id": "54f59fedb5b0593ddd865dc0bfee43fc3211ec96", "author": "Florian Jansen ", "committer": "cran-robot ", "message": "version 1.9.18\n", "time": 1783454402 }, "_maintainer": { "name": "Florian Jansen", "email": "florian.jansen@uni-rostock.de", "login": "florian-jansen", "description": "", "uuid": 297644533 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "foreign", "role": "Depends" }, { "package": "R", "version": ">= 4.1.0", "role": "Depends" }, { "package": "curl", "version": ">= 2.4", "role": "Imports" }, { "package": "DBI", "version": ">= 0.6-1", "role": "Imports" }, { "package": "hoardr", "version": ">= 0.1.0", "role": "Imports" }, { "package": "data.table", "role": "Imports" }, { "package": "tibble", "role": "Imports" }, { "package": "forcats", "role": "Imports" }, { "package": "magrittr", "version": ">= 1.5", "role": "Imports" }, { "package": "plyr", "role": "Imports" }, { "package": "RSQLite", "version": ">= 1.1.2", "role": "Imports" }, { "package": "stringr", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "xml2", "role": "Imports" }, { "package": "dplyr", "role": "Suggests" }, { "package": "indicspecies", "role": "Suggests" }, { "package": "interp", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "labdsv", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "uuid", "role": "Suggests" }, { "package": "vegan", "role": "Suggests" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-49", "n": 1 }, { "week": "2026-28", "n": 1 } ], "_tags": [ { "name": "1.9.15", "date": "2025-12-01" }, { "name": "1.9.18", "date": "2026-07-07" } ], "_stars": 2, "_contributors": [ { "user": "florian-jansen", "count": 11, "uuid": 297644533 } ], "_userbio": { "uuid": 297644533, "type": "user", "name": "florian-jansen", "followers": 0 }, "_downloads": { "count": 124, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/vegdata" }, "_mentions": 1, "_searchresults": 43, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/vegdata.html", "manual.pdf" ], "_realowner": "florian-jansen", "_cranurl": false, "_releases": [ { "version": "0.1", "date": "2009-11-11" }, { "version": "0.1.1", "date": "2009-11-24" }, { "version": "0.1.5", "date": "2010-03-16" }, { "version": "0.1.8", "date": "2010-07-24" }, { "version": "0.2", "date": "2010-10-15" }, { "version": "0.2.1", "date": "2011-02-11" }, { "version": "0.3", "date": "2011-05-19" }, { "version": "0.3.1", "date": "2011-06-30" }, { "version": "0.3.2", "date": "2011-07-02" }, { "version": "0.4", "date": "2011-09-30" }, { "version": "0.4.1", "date": "2011-10-05" }, { "version": "0.5", "date": "2011-10-12" }, { "version": "0.5.1", "date": "2011-11-07" }, { "version": "0.5.3", "date": "2012-01-12" }, { "version": "0.5.4", "date": "2012-01-16" }, { "version": "0.5.5", "date": "2012-03-20" }, { "version": "0.5.6", "date": "2012-03-22" }, { "version": "0.5.9", "date": "2012-11-17" }, { "version": "0.5.7", "date": "2012-11-17" }, { "version": "0.6", "date": "2013-02-08" }, { "version": "0.6.1", "date": "2013-04-03" }, { "version": "0.6.2", "date": "2013-04-15" }, { "version": "0.6.3", "date": "2013-08-29" }, { "version": "0.6.4", "date": "2013-09-06" }, { "version": "0.6.5", "date": "2013-11-26" }, { "version": "0.6-6", "date": "2014-01-24" }, { "version": "0.6-7", "date": "2014-11-01" }, { "version": "0.6.9", "date": "2015-04-19" }, { "version": "0.7", "date": "2015-07-08" }, { "version": "0.8", "date": "2015-09-10" }, { "version": "0.8.1", "date": "2015-09-11" }, { "version": "0.8.5", "date": "2015-11-06" }, { "version": "0.8.6", "date": "2015-11-20" }, { "version": "0.8.7", "date": "2016-02-23" }, { "version": "0.8.9", "date": "2016-03-14" }, { "version": "0.9", "date": "2016-07-15" }, { "version": "0.9.1", "date": "2017-08-21" }, { "version": "0.9.3", "date": "2018-10-02" }, { "version": "0.9.5", "date": "2018-10-24" }, { "version": "0.9.7", "date": "2019-11-05" }, { "version": "0.9.8", "date": "2020-05-13" }, { "version": "0.9.10", "date": "2022-01-09" }, { "version": "0.9.11.3", "date": "2022-06-18" }, { "version": "0.9.11.4", "date": "2022-12-17" }, { "version": "0.9.12", "date": "2024-01-29" }, { "version": "1.9.15", "date": "2025-12-01" }, { "version": "1.9.18", "date": "2026-07-07" } ], "_exports": [ "child", "comb.species", "cwm", "db_path", "parent", "parse.taxa", "recoding.taxa", "syn", "syntab", "tax", "tax.refl", "taxname.abbr", "taxname.authors", "taxname.removeAuthors", "taxname.simplify", "taxref_download_eurosl", "taxref_download_germansl", "taxval", "TCS.replace", "tv.bib", "tv.coverperc", "tv.db", "tv.dict", "tv.home", "tv.obs", "tv.readXML", "TV.replace", "tv.site", "tv.traits", "tv.veg", "tv.write" ], "_datasets": [ { "name": "lc.0", "title": "Layer combinations", "object": "lc.0", "class": [ "data.frame" ], "fields": [ "LAYER", "COMB" ], "rows": 10, "table": true, "tojson": true }, { "name": "lc.1", "title": "Layer combinations", "object": "lc.1", "class": [ "data.frame" ], "fields": [ "LAYER", "COMB" ], "rows": 10, "table": true, "tojson": true }, { "name": "lc.all", "title": "Layer combinations", "object": "lc.all", "class": [ "data.frame" ], "fields": [ "LAYER", "COMB" ], "rows": 10, "table": true, "tojson": true }, { "name": "taxlevels", "title": "Taxonomic hierarchy levels", "object": "taxlevels", "class": [ "data.frame" ], "fields": [ "rank", "level", "Euro.Med", "description" ], "rows": 31, "table": true, "tojson": true } ], "_help": [ { "page": "vegdata-package", "title": "Functions to access data from vegetation databases and evaluate taxon names", "topics": [ "vegdata-package" ] }, { "page": "child", "title": "Search taxonomic reference lists including concept synonomy and taxonomic hierarchy.", "topics": [ "child" ] }, { "page": "comb.species", "title": "Combine species in vegetation matrix", "topics": [ "comb.species" ] }, { "page": "cwm", "title": "Indicate site conditions with community weighted mean values of traits or with mode of gradient classes (sum of species amplitudes).", "topics": [ "cwm" ] }, { "page": "db_path", "title": "database path", "topics": [ "db_path" ] }, { "page": "elbaue", "title": "This is an example vegetation dataset to be included in package vegdata. Use tv.veg('elbaue') and tv.site('elbaue') to load.", "topics": [ "elbaue" ] }, { "page": "lc.0", "title": "Layer combinations", "topics": [ "lc.0" ] }, { "page": "lc.1", "title": "Layer combinations", "topics": [ "lc.1" ] }, { "page": "lc.all", "title": "Layer combinations", "topics": [ "lc.all" ] }, { "page": "parent", "title": "#' Parents of a taxon", "topics": [ "parent" ] }, { "page": "parse.taxa", "title": "Parse taxon strings into genus part and epitheta", "topics": [ "parse.taxa" ] }, { "page": "recoding.taxa", "title": "Recode taxon names, lettercodes or ID's", "topics": [ "recoding.taxa" ] }, { "page": "syn", "title": "Search synonyms of a taxon", "topics": [ "syn" ] }, { "page": "syntab", "title": "Syntaxonomic frequency tables", "topics": [ "print.syntab", "syntab" ] }, { "page": "tax", "title": "Search taxonomic reference lists including concept synonomy and taxonomic hierarchy.", "topics": [ "tax" ] }, { "page": "tax.refl", "title": "Taxon reference list to be used", "topics": [ "tax.refl" ] }, { "page": "taxlevels", "title": "Taxonomic hierarchy levels", "topics": [ "taxlevels" ] }, { "page": "taxname.abbr", "title": "Standardisation of taxonomic names, especially taxon rank indicators and hybrid signs name taxname.abbr", "topics": [ "taxname.abbr" ] }, { "page": "taxname.removeAuthors", "title": "Remove name authors from taxon names", "topics": [ "taxname.authors", "taxname.removeAuthors" ] }, { "page": "taxname.simpl", "title": "Simplify name parts for better string matching", "topics": [ "taxname.simpl", "taxname.simplify" ] }, { "page": "taxref_download", "title": "Download taxonomic databases", "topics": [ "db_download", "taxref_download", "taxref_download_eurosl", "taxref_download_germansl" ] }, { "page": "taxval", "title": "Handling of taxonomy in vegetation data.", "topics": [ "taxval" ] }, { "page": "TCS.replace", "title": "Standardise taxon list field names to match the Taxonomic Concept Transfer Schema (TCS)", "topics": [ "TCS.replace" ] }, { "page": "tv.bib", "title": "Check bibliographic references from Turboveg codes", "topics": [ "tv.bib" ] }, { "page": "tv.coverperc", "title": "Cover code translation", "topics": [ "tv.coverperc" ] }, { "page": "tv.db", "title": "Read list of available Turboveg2 databases in given Turboveg directory", "topics": [ "tv.db", "tv.dict" ] }, { "page": "tv.home", "title": "Where is your Turboveg 2 installation path or the directory with Species, Data, and Popup you want to use?", "topics": [ "tv.home" ] }, { "page": "tv.metadata", "title": "Show metainfo of vegetation database or ecodbase", "topics": [ "tv.metadata" ] }, { "page": "tv.obs", "title": "Dataframe of plot-species observations directly from Turboveg", "topics": [ "tv.obs" ] }, { "page": "tv.readXML", "title": "Reads a Turboveg XML file", "topics": [ "tv.readXML" ] }, { "page": "TV.replace", "title": "Rename data.frame columns to match Turboveg 2 conventions", "topics": [ "TV.replace" ] }, { "page": "tv.site", "title": "Load site data from Turboveg Database", "topics": [ "tv.site" ] }, { "page": "tv.traits", "title": "Load species traits from Turboveg reference list", "topics": [ "tv.eco", "tv.traits" ] }, { "page": "tv.veg", "title": "Tabulates vegetation tables from Turboveg database", "topics": [ "tv.veg" ] }, { "page": "tv.write", "title": "Write species-plot observations and site information to Turboveg database.", "topics": [ "tv.write" ] }, { "page": "vegdata", "title": "vegdata", "topics": [ "vegdata" ] } ], "_rundeps": [ "bit", "bit64", "blob", "cachem", "cli", "cpp11", "curl", "data.table", "DBI", "digest", "fastmap", "forcats", "foreign", "glue", "hoardr", "lifecycle", "magrittr", "memoise", "pillar", "pkgconfig", "plyr", "R6", "rappdirs", "Rcpp", "rlang", "RSQLite", "stringi", "stringr", "tibble", "utf8", "vctrs", "xml2" ], "_vignettes": [ { "source": "vegdata.Rnw", "filename": "vegdata.pdf", "title": "An R package for vegetation data access, formatting and taxonomic unification", "engine": "knitr::knitr", "headings": [ "Preliminary notes", "Provided functionality", "Preparations", "Service functions", "Load data from Turboveg", "Vegetation data", "Site conditions", "Additional functions", "Vegetation analyses" ], "created": "2012-01-16 17:11:15", "modified": "2026-07-07 20:00:02", "commits": 32 } ], "_score": 3.235528446907549, "_indexed": true, "_nocasepkg": "vegdata", "_universes": [ "florian-jansen" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.9.18", "date": "2026-07-08T06:51:25.000Z", "distro": "resolute", "commit": "54f59fedb5b0593ddd865dc0bfee43fc3211ec96", "fileid": "https://r2.ropensci.org/461da57f762249dde43a1d3412e4880b93c3774301399bb600561f1bbc4e1c18", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/florian-jansen/actions/runs/28923191373" }, { "r": "4.6.1", "os": "linux", "version": "1.9.18", "date": "2026-07-08T06:51:27.000Z", "distro": "resolute", "commit": "54f59fedb5b0593ddd865dc0bfee43fc3211ec96", "fileid": "https://r2.ropensci.org/2067accf2544d452cb2a15bb758778e6c3d0749d472f28621403955a286ababe", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/florian-jansen/actions/runs/28923191373" }, { "r": "4.5.3", "os": "mac", "version": "1.9.18", "date": "2026-07-08T06:51:17.000Z", "commit": "54f59fedb5b0593ddd865dc0bfee43fc3211ec96", "fileid": "https://r2.ropensci.org/361cd5f2564381541500ee93572b0ae0f525653e4031c2e54e3b5655a26a758a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/florian-jansen/actions/runs/28923191373" }, { "r": "4.6.1", "os": "mac", "version": "1.9.18", "date": "2026-07-08T06:51:23.000Z", "commit": "54f59fedb5b0593ddd865dc0bfee43fc3211ec96", "fileid": "https://r2.ropensci.org/4ed7f96ffaac4922cd12c5a0fab754d1f8e457a84f8e3749bad66aec643c8597", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/florian-jansen/actions/runs/28923191373" }, { "r": "4.6.0", "os": "wasm", "version": "1.9.18", "date": "2026-07-08T06:51:22.000Z", "commit": "54f59fedb5b0593ddd865dc0bfee43fc3211ec96", "fileid": "https://r2.ropensci.org/cb95278e480e3d87b4e579c6b3707e1ae77b8d0dd416b2a8f8f5d13903615203", "status": "success", "buildurl": "https://github.com/r-universe/florian-jansen/actions/runs/28923191373" }, { "r": "4.7.0", "os": "win", "version": "1.9.18", "date": "2026-07-08T06:50:23.000Z", "commit": "54f59fedb5b0593ddd865dc0bfee43fc3211ec96", "fileid": "https://r2.ropensci.org/96bc6160c86893356d5f123c0bc023e21d045baa9f9864055e01b0386bc44a23", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/florian-jansen/actions/runs/28923191373" }, { "r": "4.5.3", "os": "win", "version": "1.9.18", "date": "2026-07-08T06:50:35.000Z", "commit": "54f59fedb5b0593ddd865dc0bfee43fc3211ec96", "fileid": "https://r2.ropensci.org/ffbccfb97f356b8eb0e0c34bd8a13680877d6d28bee431961cab7e3464a8aec0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/florian-jansen/actions/runs/28923191373" }, { "r": "4.6.1", "os": "win", "version": "1.9.18", "date": "2026-07-08T06:50:25.000Z", "commit": "54f59fedb5b0593ddd865dc0bfee43fc3211ec96", "fileid": "https://r2.ropensci.org/8425009aa535275b8cd79343b031e4eed8283fc7ea95d093ffde80f927d3c705", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/florian-jansen/actions/runs/28923191373" } ] }